modrak_m, to bioinformatics
@modrak_m@bayes.club avatar

A nice little paper arguing that Chord diagrams are generally harder to understand than Sankney plots for the same data. Relevant for when people will next request the "nice circular diagrams" for a bioinformatics analysis: https://dl.acm.org/doi/fullHtml/10.1145/3544548.3581119

A Sankney plot showing the flow of loans and debts between a few nations.

zkamvar, to pdx
@zkamvar@hachyderm.io avatar

I'm looking for a new job (remote or ), please boost!

I am a research software engineer with 11 years experience developing interdisciplinary scientific software that is robust, , and user-friendly.

I have experience in population genetics, , , and . My main language is , but I can also speak , , , #C, , etc.

The following thread describes why you want me on your team

1/

computingnature, to bioinformatics
@computingnature@neuromatch.social avatar

Despite all their hype in AI, we found that Transformers do not outperform for cellular segmentation tasks: https://www.biorxiv.org/content/10.1101/2024.04.06.587952v1

Cellpose outperforms winner of Neurips challenge (Ma et al 2024) on test set images. We show example images from the test set with Cellpose segmentations overlaid in yellow.

OpenBio, to bioinformatics

Just FYI, as announced earlier this week, we've stopped using X/Twitter (both our OBF account and BOSC) https://www.open-bio.org/2023/11/20/leaving-x/ - Mastodon users can follow us here or @BOSC for our annual conference specifically.

lenri2017, to Futurology German

Ich hätte 2 interessante Stellen in meinem Sequencing Team (Rhein Main, BioTech Branche):

  1. Lab Technician, R&D, Quality Control, NGS (Illumina) and Third Generation Sequencing

  2. Working Student Bioinformatics, Front End Development, R&D, Quality Control, NGS (Illumina) and Third Generation Sequencing, flexible working time

Wer Interesse hat, bekommt von mir den Link privat gesendet :)

multimeric, to bioinformatics
@multimeric@genomic.social avatar

Another new job at WEHI, this time for a Research Software Engineer in my team! https://wehi.wd3.myworkdayjobs.com/en-US/WEHI/job/Research-Computing-Engineer--Large-data-analytics-_JR2188-3

cookmyeggs, to ADHD

I just joined tech.lgbt so here's a small #introduction 😊

I'm Lucas (he/him), 29, and I'm a messy gay with #ADHD ♉

I'm a PhD student in #bioinformatics 👨‍💻

When it comes to music, I love pop music and electronic music, especially when it gets experimental (SOPHIE and the PC Music collective literally rewired parts of my brain).

Otherwise I just enjoy regular club music and am always out dancing somewhere on weekends. Actually nightlife has helped me a lot build a community of likeminded people and is now an important part of my life and identity :heart_progress:

Here's a few words about some of my interests:

#history and #archaeology: recent history, renaissance, and ancient civilisations (Ancient Greece in particular)

#computerscience and #programming: I have to code a lot for my work, mostly in R and python, and I would like to learn C++

also #design, #tarot, #tea, #gaming, #asoiaf, #tolkien, etc

I speak #French, #English, and trying to learn #Spanish and #Greek

MrHedmad, to bioinformatics
@MrHedmad@genomic.social avatar

My program allows me to spend up to 6 months abroad to work on anything I'd like (with my supervisors approval).

I'd like to spend them in the and fields. If anyone has some ideas of whom I could contact I'd be grateful.

My about page: https://mrhedmad.github.io/blog/about/

mdziemann, to bioinformatics

What could go wrong?

https://www.biorxiv.org/content/10.1101/2023.09.08.556814v1

verukita1, to machinelearning

📚10 Statistics Books that you should download! (open access) Find them in my Medium!♥

👉https://medium.com/@vespinozag/10-statistics-books-that-you-should-download-open-access-1655780a73fc

#MachineLearning #networkscience #rstat #R #datascience #statistics #neuroscience #bioinformatics #PhD #postdoc #pythonprogramming #AI #dataviz #Python

swatantra, to academia
@swatantra@fosstodon.org avatar

I am looking for a new position in computational biology/bioinformatics preferably in in the .

I am an experienced Computational Biologist with eight years of post-PhD experience in applying computational methods across diverse domains, from molecular modeling to and based single-cell flow/mass cytometry and serum proteomics data analysis.

Any leads would be helpful.

MelBioInf, to bioinformatics
@MelBioInf@genomic.social avatar

We are hiring! Melbourne Bioinformatics is expanding our team by recruiting into three new positions. This is your chance to become part of a dynamic team of expert bioinformaticians who are at the forefront of Australian training, outreach, and research.

All three roles are full-time, continuing positions based at the University of Melbourne's Parkville campus. Applications close 15 May 2024. For more information, including application instructions, follow the links below.

lwpembleton, to datascience
@lwpembleton@genomic.social avatar

I like reading 📖 about other people's computer setups, tools and tech they use as part of their daily work in #datascience 📊and #bioinformatics 🧬🖥️ Anyone got any good links? 🔗

gpollara, (edited ) to academicchatter
@gpollara@med-mastodon.com avatar

So many good points in this piece by
@PhilippBayer

My highlight in this screenshot (#science delivery & success is a TEAM effort!), but if you're vaguely involved in #academia +/- #bioinformatics, do have a read and think how it all may apply to you. #academicchatter @academicchatter
https://genomic.social/@PhilippBayer/110644840476993836

necrosis, to science German
@necrosis@chaos.social avatar

Leute. Ich hab sooooooooooo was geiles entdeckt.

Kennt ihr schon https://www.olivetin.app/ ?

Damit kann man Tools eine verpassen. 😍

Ok, das würde sich auch mit von umsetzen lassen. Aber dennoch.

Für unsere Beschäftigten, die eher Windows gewohnt sind kann ich so Shell Tools leichter zugänglich machen. Das ist so toll. 😍

Für sicher auch einen Blick wert. :3


bffo, to bioinformatics
@bffo@mastodon.social avatar

You do in ? Elsewhere in the world? You lead a group? Maybe invite your students be volunteers at the largest International Bioinformatics Conference?

https://www.iscb.org/ismb2024/general-info/apply-to-be-event-staff

marcrr, to bioinformatics
@marcrr@ecoevo.social avatar

Can I do an if it isn't my first message? Here goes.
I'm a prof of in the department of and of university of Lausanne. I try to reconcile and , and increasingly , approaches to evolution. I like to make , notably bgee.org for gene expression. I don't like disciplinary boundaries except to jump over them. Hi!

nesper94, to bioinformatics Spanish

Hi there!

I am a biologist working in the University of Antioquia, in Medellín, Colombia. I am mostly involved in and , but I enjoy and work in other subjects too:

  • Molecular Biology
  • Genetics
  • Dynamical systems (ODEs)
  • Systems Biology
  • Microbiology

I believe in and I could say that and free software changed my life.

Currently I am promoting the field of Computational Biology in Colombia: https://biologia-computacional.github.io/

F2erron, to bioinformatics French
@F2erron@fediscience.org avatar

Hello sugar people of the :fediverse: . My former collegue Bernard Henrissat now in 🇩🇰 is looking for a student in a Marie Sklodowska-Curie 🇪🇺 training network to work with him at the Technical University of Denmark. More info:
https://euraxess.ec.europa.eu/jobs/201030
The deadline for application is May 31st, 2024 and the job will start in November.

Skills desired: , general biology (++ ) and fluency in 🇬🇧.
Eligibility: the candidate should not have worked in 🇩🇰 before.

lambdamoses, to python
@lambdamoses@fosstodon.org avatar

I'm thrilled to announce a new preprint from our lab, with in depth analyses showing that Seurat and Scanpy give drastically different results for ostensibly the same data analysis tasks: https://www.biorxiv.org/content/10.1101/2024.04.04.588111v1

thatdnaguy, to linux
@thatdnaguy@genomic.social avatar

If you work on the command-line in Linux a lot, find + exec is your friend.

"I have many copies of MYFILE because my project got sloppy over time. Are they different?"

find . -type f -readable -name "MYFILE*" -exec md5sum {} ;

Also handy for if temporary files get out of control and rm chokes.

find . -type f -readable -name "*.temp" -exec rm {} ;




BOSC, to opensource
@BOSC@genomic.social avatar

TWO WEEKS LEFT to submit your abstract to BOSC! The deadline is April 19 by the end of the day Anywhere on Earth. (Sorry, no extensions.) We welcome submissions on all aspects of and

If you are hoping for a talk, please submit a 2-page pdf; if you only want a poster, we only need a short (250-word) abstract. Please see https://www.open-bio.org/events/bosc-2024/submit/ for more information and a button for submitting.

davelunt, to bioinformatics
@davelunt@genomic.social avatar

If anyone would like to chat to me about applying for a MSCA fellowship please get in touch #bioinformatics #molecular_evolution #genomics #polyploidy #transposons #population_genomics
https://marie-sklodowska-curie-actions.ec.europa.eu/actions/postdoctoral-fellowships?

rmflight, to bioinformatics
@rmflight@mastodon.social avatar

What RNA-Seq datasets are everyone using for RNA-Seq differential analysis workshops, using {DESeq2} or {limma} ?

Two or three categories, and ideally a good (4 or 5+) number of replicates, human or mouse?

We have some new methods in ontology enrichment, and we really could use some more datasets to try them on.

I've found the {airways} dataset, and lung adenocarcinoma from {recount3} (as an easy pull). Looking for others. TIA.

MelBioInf, to bioinformatics
@MelBioInf@genomic.social avatar

A final reminder: we are currently advertising three jobs! Applications close on 15 May. Details and links in the thread ⬇️ https://genomic.social/@MelBioInf/112295817677021230

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