Elendol, to bioinformatics
@Elendol@hachyderm.io avatar

Having again some thoughts about the protein sequences we all in #teammassspec use for #proteomics / #peptidomics experiments. I so much want to have better tools to have more granular control over the peptide sequences used by engines. #bioinformatics

nmronline, to bioinformatics
@nmronline@mstdn.science avatar
Elendol, to bioinformatics
@Elendol@hachyderm.io avatar

Building our own knowledge graph, this is pretty cool. A lot of technical work and a lot of communication and data modelling work with the different experimental and computational teams.

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

It's my birthday! 🥳

In celebration, our senior sow signs off our new software solution!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

MelBioInf, to bioinformatics
@MelBioInf@genomic.social avatar

A final reminder: we are currently advertising three jobs! Applications close on 15 May. Details and links in the thread ⬇️ https://genomic.social/@MelBioInf/112295817677021230

Elendol, to bioinformatics
@Elendol@hachyderm.io avatar

Spending the whole month solving data crimes, a lot of dead bodies, many suspects identified, rehabilitation won't be a possibility for many...

sotneStatue, to bioinformatics
@sotneStatue@fosstodon.org avatar

Today I'll be using #R for RNAseq analysis for the first time, wish me luck

#bioinformatics

numeredevs,
@numeredevs@fosstodon.org avatar

@sotneStatue Luck! Can you share a bit about your insights?

Lluis_Revilla,
@Lluis_Revilla@fosstodon.org avatar

@sotneStatue Good luck. I'm sure you'll find @Bioconductor packages very helpful! There is also a lot of materials on how to do it.
Pst if you use R the hashtag we use is usually #rstats. You might get more help if you post it with that hashtag 😉

bffo, to bioinformatics
@bffo@mastodon.social avatar

You do in ? Elsewhere in the world? You lead a group? Maybe invite your students be volunteers at the largest International Bioinformatics Conference?

https://www.iscb.org/ismb2024/general-info/apply-to-be-event-staff

bffo, to bioinformatics
@bffo@mastodon.social avatar

Remembering the first Canadian Workshop: … we used to use mouse pads back then! This was a useful one for those didn’t know their standard genetic code by heart

marcia,
@marcia@spore.social avatar

@bffo
I had one of those!

Mehrad, to bioinformatics
@Mehrad@fosstodon.org avatar

>> Chan Zuckerberg CELL by GENE Discover (CZ CELLxGENE) is a collection of free and open-source tools for finding, querying, analysing, downloading and publishing single-cell data. As of April, it includes some 85 million single cells and 1,317 data sets covering 844 cell types, curated and uniformly processed

https://www.nature.com/articles/d41586-024-01217-y

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

We've answered ALL of our current design and engineering aims!

We're also looking forward to talking to some influential people, and forming some great agreements.

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

necrosis, to science German
@necrosis@chaos.social avatar

Leute. Ich hab sooooooooooo was geiles entdeckt.

Kennt ihr schon https://www.olivetin.app/ ?

Damit kann man Tools eine verpassen. 😍

Ok, das würde sich auch mit von umsetzen lassen. Aber dennoch.

Für unsere Beschäftigten, die eher Windows gewohnt sind kann ich so Shell Tools leichter zugänglich machen. Das ist so toll. 😍

Für sicher auch einen Blick wert. :3


mina,
@mina@berlin.social avatar

@necrosis

Aber diese Olivtin-App hole ich mir auch.

fiee,
@fiee@literatur.social avatar

@necrosis Danke für den Tipp, werde ich mir ansehen - nachdem ich gerade meine wichtigsten Tools hinter Flask & SemanticUI versteckt habe …

rmflight, to bioinformatics
@rmflight@mastodon.social avatar

What RNA-Seq datasets are everyone using for RNA-Seq differential analysis workshops, using {DESeq2} or {limma} ?

Two or three categories, and ideally a good (4 or 5+) number of replicates, human or mouse?

We have some new methods in ontology enrichment, and we really could use some more datasets to try them on.

I've found the {airways} dataset, and lung adenocarcinoma from {recount3} (as an easy pull). Looking for others. TIA.

davelunt, to bioinformatics
@davelunt@genomic.social avatar
MelBioInf, to bioinformatics
@MelBioInf@genomic.social avatar

We are hiring! Melbourne Bioinformatics is expanding our team by recruiting into three new positions. This is your chance to become part of a dynamic team of expert bioinformaticians who are at the forefront of Australian training, outreach, and research.

All three roles are full-time, continuing positions based at the University of Melbourne's Parkville campus. Applications close 15 May 2024. For more information, including application instructions, follow the links below.

MelBioInf,
@MelBioInf@genomic.social avatar

Senior Bioinformatician, Bioinformatics Training (Level C)

You will lead our training operations, collaborate with external partners, and provide strategic oversight to ensure training targets are met effectively and efficiently.

https://jobs.unimelb.edu.au/en/job/916660/senior-bioinformatician-bioinformatics-training

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