@kakape@mas.to
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kakape

@kakape@mas.to

science journalist. molecular biologist. curious. contributing correspondent "Science Magazine" part of https://podcasts.social/@pandemia
interested in #infectiousdiseases, #misinformation/ and all things #blue

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kakape, to H5N1
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Michigan just reported a human case of in a dairy worker, the second human case linked to the ongoing outbreak in dairy cows in the US.
As in the previous case in Texas, the worker only reported eye symptoms.

kakape, to H5N1
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With latest update from @USDA the total number of herds affected in the outbreak in the US is 49 herds in 9 states (without widespread testing mind you…)
8 of the last 12 confirmations are from herds in Michigan

https://www.aphis.usda.gov/livestock-poultry-disease/avian/avian-influenza/hpai-detections/livestock

kakape, to H5N1
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With spreading amongst dairy cows, one of the most important things to think about right now is what would need to happen for this virus to actually start a pandemic.
I'm on a train, so a brief thread...

kakape,
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One thing to remember is that compared to some other influenza viruses H5N1 actually faces pretty high barriers to becoming a human-to-human pathogen. I wrote a story a little over a year ago outlining some of the changes it would probably need:
https://www.science.org/content/article/bad-worse-avian-flu-must-change-trigger-human-pandemic

kakape,
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As Tom Peacock told me at the time: H5 probably has one of the largest barriers to being a pandemic virus of any avian influenza virus. “It's really wrong in so many ways”, he told me.

kakape,
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But as Peacock also pointed out: “Obviously it only has to get the right combination of mutations once to jump.”
Getting that combination may be the virus’ equivalent of winning the lottery, but with millions and millions of viral particles in a milliliter of milk, boy oh boy is this virus buying a lot of lottery tickets.

kakape,
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That’s what Martin Beer meant when he told me recently: “Nobody wants this dangerous virus to become entrenched in a new species that we use to produce food and that has so much close contact to humans.”

kakape,
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In theory there is a shortcut for the virus to acquire a lot of changes at once and that is reassortment: The influenza genome is made up of 8 separate segments and when two different viruses infect the same cell they can get reshuffled like two decks of cards coming together.

kakape,
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This is why researchers have always been worried a lot about pigs. They can get infected with both human and avian influenza viruses and are sometimes called “mixing vessels” because of that.
And this is where a recent preprint on the receptors in cows’ udders comes in.

kakape,
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The authors show that a cow’s mammary gland contains both duck-type and human-type flu receptors (sialic acids, more about them another time). And they write that this shows that “cattle have the potential to act as a mixing vessel” for new flu viruses.
https://www.biorxiv.org/content/10.1101/2024.05.03.592326v1.full.pdf

kakape,
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Most researchers I've talked to are pretty skeptical of this idea, however. For the udder to function as a mixing vessel, you would have to have the same cells infected by H5N1 and a human flu virus. As far as we can tell that is highly unlikely.

kakape,
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Even Richard Webby, one of the preprint's authors, agreed with this when I talked to him. “The possibility is there, but you’re dead right, it’s a pretty rare occurrence, I'd think, even this outbreak.”
In more than 25 years of studying H5N1 this is the first time it had been seen in a cow’s udder, he noted.

kakape,
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But that doesn’t mean that the presence of both types of receptors does not pose a risk for the virus adapting over time to the human receptor.
As Peacock told me there is a pattern in some species that have both receptors for the virus to adapt (in the long-term, not the short-term!) to the second one. “It seems a good reason to get this eradicated from cattle as soon as possible.”
https://www.science.org/content/article/combat-cow-flu-outbreak-scientists-plan-infect-cattle-influenza-high-security-labs

kakape,
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The point of all this is that there are ways we can see that the virus might start to change in exactly the ways we don’t want it to change. That might not happen tomorrow or next week, but the longer it spreads and replicates, the more likely it is to happen.

kakape,
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And that's just what we know. Until a few weeks ago no-one anticipated that cow’s udders would have these two types of receptors and that avian flu would grow so well there.
And as Helen Branswell
points out in this great piece, that is the whole point of our experience with this virus: It keeps surprising us.
https://www.statnews.com/2024/05/09/bird-flu-upends-avian-influenza-dogma/

kakape, to H5N1
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After 10 months off for my science journalism fellowship at MIT I’m jumping back into infectious disease reporting and uh boy I’m not gonna be bored am I?!

Here's a first story on #h5n1 in cows (and I'll try to write a thread later):

https://www.science.org/content/article/combat-cow-flu-outbreak-scientists-plan-infect-cattle-influenza-high-security-labs

kakape, to random
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kakape, to random
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So sad to hear that Paul Alexander passed yesterday at age 78 from Covid-19. Paul contracted Polio in 1952, when he was just six years old. He ended up in an iron lung and while he could live outside it for extended periods of time (having learnt glossopharyngeal breathing) he never really left it.

image/jpeg

kakape,
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Two years ago my colleagues and I talked to Paul for a few polio episodes of @pandemia
Paul told us about the full life he lived, about the horror of the disease, about studying law and practicing as a lawyer, writing a book and much more.
At the time we put out a special episode just with the interview. (There is a German intro til about 8:00. then you can hear the full interview in English though he can be hard to understand over the sound of the iron lung)
https://files.podcaster.de/podcasthosting-user-anlbfe/1485/pan42.mp3

kakape,
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Paul was an extraordinary person and he lived an extraordinary life by any measure.
I remember being shocked when I first heard about him, that there were people who still needed an iron lung. It was a reminder of the terror of polio and the power of vaccines.

But what most stuck with me after our episodes (and what my colleagues and I talked about the most) was actually the force of his spirit, his wit, his will to live life to the fullest, far beyond what people thought was possible for him.

kakape,
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For those who speak German:
The full first episode about polio featuring Paul Alexander is here: https://steadyhq.com/en/pandemia/posts/6c09d9ba-e53b-4e43-be97-36b4b3ba323c
And a German transcript of the interview here: https://www.riffreporter.de/de/wissen/polio-kinderlaehmung-interview-podcast-eiserne-lunge-pandemia

kakape,
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Journalist Vivian Pasquet visited Paul in Texas earlier this year and has a beautiful piece that just came out in Süddeutsche Zeitung:

https://t.co/KIMexPLqj5

kakape, to random
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Still on my fellowship and not supposed to be working, but hey, what can you do when your editor has a story waiting to be written and it has to do with both microbes and the color blue...
https://www.science.org/content/article/tinkering-fungus-genes-can-turn-blue-cheeses-red-green-or-white

kakape, to random
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Stoked that Stat included my story on climate change and infectious disease in their list of favourite stories from 2023. It was the last story I finished before taking a break from writing to focus on my KSJ fellowship at MIT.
You can find the story here (and it's part of a package of great stories on climate and health):
https://www.science.org/content/article/malaria-cases-could-ebb-even-hotter-world-other-diseases-will-get-worse

kakape,
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The jealousy list is a nice tradition and the entire thing is worth checking out here: https://www.statnews.com/2023/12/29/stat-jealousy-list-2023/

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