nmronline, to bioinformatics
@nmronline@mstdn.science avatar

Happy Easter!

@bioinformatics @biophysics @chemistry @compchem @gardening @nmrchat @plants @plantscience @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

With his new book, Reuben ruminates on special relativity!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #GuineaPig #metabolomics #NMR #NMRChat #NMROnline #physics #spectroscopy #StructuralBiology

naturepoker, to bioinformatics
@naturepoker@genomic.social avatar

Yikes - this looks like a pretty serious issue. Especially considering high chance that the original author of the package might have been behind the backdoor attempt.

I know quite a few #bioinformatics packages also need xz for compilation. Hate that we need to worry about stuff like this more from now on.

https://arstechnica.com/security/2024/03/backdoor-found-in-widely-used-linux-utility-breaks-encrypted-ssh-connections/

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

#NMROnline – ELECTRO (available soon)

Another software engineering breakthrough!

@gubouvignies @bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #metabolomics #NMR #NMRChat #physics #spectroscopy #StructuralBiology

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

Indiana Jones and the Quest for the Third Edition!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available soon)

We're getting faster, and so is ELECTRO, with ChemEx datasets now loading at lightspeed!

@gubouvignies @bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

persagen, to llm
@persagen@mastodon.social avatar

Bioinformatics and Biomedical Informatics with ChatGPT: Year One Review
https://arxiv.org/abs/2403.15274

... covering omics, genetics, biomedical text mining, drug discovery, biomedical image understanding, bioinformatics programming, and bioinformatics education ...

#LLM #ChatGPT #NLP #AI #bioinformatics #biomedical

lwpembleton, to programming
@lwpembleton@genomic.social avatar

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

Yesterday, we revealed the complete list of software that will be available in our web-based data analysis platform.

Today, we're… 👇

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

pyOpenSci, to random
@pyOpenSci@fosstodon.org avatar

Accepted into the pyOpenSci ecosystem in 2021, OpenOmics from Jonny Tran is a #Python library that helps with the integration of heterogeneous multi-omics #bioinformatics data through both an API and web interface.

OpenOmics supports:
🧬 Genomics, Transcriptomics, Proteomics, and Clinical data.
〰️ Harmonization with 20+ popular annotation, interaction, and disease-association databases, such as GENCODE, Ensembl, RNA Central, BioGRID, and DisGeNet

📄Docs: https://openomics.readthedocs.io/en/latest/

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

Our web-based, data analysis platform, is professionally engineered, features bespoke functionality, and a library of popular software!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

We hope everybody is having a fantastic time at !

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

lunareclipse, to bioinformatics

anyone know some simple software for extracting tables from scientific papers (pdfs)?

#bioinformatics

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

#NMROnline – ELECTRO (available later this year)

🎶 Relax, we're on it, ELECTRO's coming along. 🎶

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #metabolomics #NMR #NMRChat #physics #SoftwareDevelopment #SoftwareEngineering #spectroscopy #StructuralBiology #WebDev

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

"We've just released this major update as version 1.1, and we couldn't have done it without your help."

Glad we could help. 😎

@bioinformatics @biophysics @chemistry @compchem @nmrchat @strucbio

bioconductor, to bioinformatics
@bioconductor@genomic.social avatar

✍️ Check out our blog post about the recent launch of the redesigned Bioconductor website: https://buff.ly/4bYFJEb

#BioconductorCommunity #Bioinformatics #RStats

hexylena, to bioinformatics
@hexylena@galaxians.garden avatar

waking up to horrors well within my comprehension

i know so many viral annotation/phylogeny colleagues who would’ve loved this.

bigcat_UM, to bioinformatics
@bigcat_UM@social.edu.nl avatar

hi, we're the #bioinformatics group BiGCaT at Maastricht University in The Netherlands, led by Prof. dr Chris Evelo (chair), Dr Susan Steinbusch-Coort, Dr Lars Eijssen, Dr Egon Willighagen, and Dr Friederike Ehrhart. More information on our homepage at http://www.bigcat.unimaas.nl/ #introduction

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

#NMROnline – ELECTRO (available later this year)

We have now built the NmrPipe workflows for NUS processing using Smile and IST!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio

#biochemistry #bioinformatics #biology #biophysics #chemistry #CompChem #metabolomics #NMR #NMRChat #physics #SoftwareDevelopment #SoftwareEngineering #spectroscopy #StructuralBiology #WebDev

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

We have now built the NmrPipe workflows for NUS processing using Smile and IST!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

looks fun!

We hope everybody is having a great time, whilst building up their networks and strengthening their portfolios!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

looks fun!

We hope everybody is having a great time, whilst building up their networks and strengthening their portfolios!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio

modrak_m, to bioinformatics
@modrak_m@bayes.club avatar

A nice little paper arguing that Chord diagrams are generally harder to understand than Sankney plots for the same data. Relevant for when people will next request the "nice circular diagrams" for a bioinformatics analysis: https://dl.acm.org/doi/fullHtml/10.1145/3544548.3581119

A Sankney plot showing the flow of loans and debts between a few nations.

nmronline, to bioinformatics
@nmronline@mstdn.science avatar

– ELECTRO (available later this year)

Our data analysis platform is web-based, so we will manage the software in real time, so you can focus on the science!

@bioinformatics @biophysics @chemistry @compchem @nmrchat @physics @strucbio

tyx, to bioinformatics

The most annoying things in data analysis:

  • R package/lib hell
  • basic Python API instability
  • conda solving envos for hours
  • lustre (all about it)
  • each R package having it's own class for genetic/trees/geospatial data storage.

I have freaking bingo of hitting all of them today at once.

Are there any I missed?

#rstats #conda #lustre #dllHell #PackageHell #DependencyHell
#geospatial #bioinformatics #hpc

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