I am going to give MaxQuant on Linux a try, what could possibly go wrong...
I ended up writing a custom docker image because the (official?) conda environment is broken (thus the docker image on biocontainer is also broken). This is very fun because MaxQuant is a freeware we have to manually download from a generated link.
But, I hear you, the test command for the conda environment works. Well yes. You can use --version and it works, so the test passes... #teammassspec#bioinformatics
It's 2024. Most of #bioinformatics is yet to come and the best we can offer future generations of scientists is idiosyncratic R-scripts, massive Nextflow pipelines and file formats such as FastQ? We have to do better.
I like reading 📖 about other people's computer setups, tools and tech they use as part of their daily work in #datascience 📊and #bioinformatics 🧬🖥️ Anyone got any good links? 🔗
I've been accepted to Northeastern University for graduate school.... again! 😅 As I continue my #PhD in Computer Science, I'll also be taking courses in pursuit of a Graduate Certificate in #Bioinformatics, concurrent to my computer science dissertation on #datavisualization tools for high-dimensional data exploration. Super excited to see where this next chapter leads!
Stowers is starting up a paid training program for bioinformatics, please share with anyone who might be interested in something like that! (in Kansas City)
Come work with us! I have a PhD position available to help understand which mutations in the non-coding parts of coding transcripts have functional consequences in Stem Cells.
We will using genome wide mesaurement of the effect of variation in miRNA binding sites to address when vairation causes changes in regulation and when it doesn't.
Mixed wetlab, bioinformatics and statistics project.