HeidiSeibold, 2 months ago to random

Want to set up your research or code projects in a #FAIR and #reproducible way?

There are very useful templates available. I collected a couple of them in this post.

https://buff.ly/4agJzah

KrisAnathema, 3 months ago to conservative

Four #principles for improved #statistical #ecology

#OpenAccess
@MethodsEcolEvol

"(1) define a focussed #ResearchQuestion, then plan #sampling and #analysis to answer it; (2) develop a #model that accounts for the #distribution and #dependence of your #data; (3) emphasise #EffectSizes to replace #StatisticalSignificance with #EcologicalRelevance; and (4) report your #methods and #findings in sufficient detail so that your research is valid and #reproducible"

https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.14270

HeidiSeibold, 4 months ago to random

I am collecting templates for setting up a #FAIR and #reproducible projects.

Here's what I already have:

Research:
🗃️ GIN-Tonic standardized research folder structure: https://gin-tonic.netlify.app/standard/
🗃️ My research project template: https://github.com/HeidiSeibold/research-project-template
🗃️ R analysistemplates: https://github.com/jonas-hag/analysistemplates

Code:
📦 Python cookiecutter template: https://github.com/Materials-Data-Science-and-Informatics/fair-python-cookiecutter
📦 R devtools: https://devtools.r-lib.org/

🔍 Anything missing? 🔎

The full list will be published in an upcoming newsletter post.

rodolphe, 4 months ago to random

Wow, Gentoo officially supporting binary packages is something I didn't expected. 😲

https://www.gentoo.org/news/2023/12/29/Gentoo-binary.html

barneyharris, 5 months ago to Futurology

noob question about #reproducible #research #docker #rstats #python #academicchatter #foss

If I'm looking to use Docker to assist with making my research reproducible then should I rely on both Dockerfiles and Dockerimages or one or the other? As I understand it, the Dockerfile specifies how the Docker image will be built but an image can contain the scripts, original data, and correctly versioned software / libraries etc. So why not just / always publish the image?

RUGatHDSI, 6 months ago to datascience

Next week Thursday (Nov 16th) @ 5pm Eastern Time we're so excited that Noam Ross @noamross will be speaking about Tools and Teams for Reproducible Science with R!

You should join!!

Find the registration on our web-page here:
https://rug-at-hdsi.org/calendar/

#rstats @rstats #DataScience #Reproducible #academia #teams

civodul, 6 months ago to hpc

Super-sysadmin Yann “digital plumber” Dupont explains how his team has been building a fancy #HPC cluster on #Guix System—perhaps the first of its kind!
https://hpc.guix.info/events/2023/workshop/program/#reproducible-virtual-machine-management-with-guix

civodul, 6 months ago to random

Now listening to Sarah Gibson of #JupyterHub, #Binder, mybinder.org, @turingway, and more.
https://hpc.guix.info/events/2023/workshop/program/#reproducible-computational-environments-with-binder

“Irreproducible research has real-world effects”, citing the economics paper that led to austerity measures in many countries.

“It’s OK to be human and make mistakes” as one incentive to produce #ReproducibleResearch.

allixender, 6 months ago to random

Excited about the keynote of @rabernat of @pangeo_data and @earthmoverhq #BIDS #Bids2023 #bigdatafromspace #reproducible #OpenScience #ClimateAction #geospatial

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brodriguesco, 6 months ago to random

Are you an #RStats user and want to make your projects #reproducible? I wrote 7 blog posts explaining how to get started with #Nix

https://www.brodrigues.co/blog/2023-07-13-nix_for_r_part1/
https://www.brodrigues.co/blog/2023-07-19-nix_for_r_part2/
https://www.brodrigues.co/blog/2023-07-30-nix_for_r_part3/
https://www.brodrigues.co/blog/2023-08-12-nix_for_r_part4/
https://www.brodrigues.co/blog/2023-09-15-nix_for_r_part5/
https://www.brodrigues.co/blog/2023-09-20-nix_for_r_part6/
https://www.brodrigues.co/blog/2023-10-20-nix_for_r_part7/

orhun, 6 months ago to hamburg

Reproducible Builds Summit 2023!!!

💠 https://reproducible-builds.org/events/hamburg2023/ (cc @reprobuilds)

#reproduciblebuilds #reproducible #conference #hamburg

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boilingsteam, 6 months ago to linux

NixOS Reproducible Builds: minimal ISO successfully independently rebuilt: https://discourse.nixos.org/t/nixos-reproducible-builds-minimal-installation-iso-successfully-independently-rebuilt/34756 #linux #update #foss #nixos #distro #reproducible #build #milestone

brodriguesco, 8 months ago to datascience

It's back to school so how about learning how to write #reproducible #datascience pipelines with #RStats ?

My book "Building reproducible analytical pipelines with #rstats" can help you with that!

Buy a drm-free epub or pdf @leanpub

https://leanpub.com/raps-with-r/

Physical copies are available https://amazon.com/dp/B0C87H6MGF (check your local market place)

Read for free forever: https://raps-with-r.dev

bakerdh, 8 months ago to random

New #preprint about our experiences offering 'reproducibility as a service' for a six month period: https://psyarxiv.com/k8d4u/

We made 10 papers #reproducible from @YorkPsychology covering a wide range of study designs, supported by funding from Research England 1/6

dinosaure, 9 months ago to random French

And, yes, this is the end of my vacation! After one year of doing some #OCaml stuff at http://robur.coop, I would like to synthesis what is going on about #unikernels and #MirageOS!

RossGayler, 9 months ago to random

@brodriguesco I just cast a quick (and very inexpert) eye over your https://github.com/b-rodrigues/rix repo. I see the claim that "With Nix, it is essentially possible to replace {renv} and Docker combined."

What level of dependency can't be addressed by Nix? Obviously not hardware. What about OS version?

#rstats #Nix #reproducible

brodriguesco, 9 months ago to random

if you want to know more about me and my latest book on #reproducible pipelines with #RStats here's my interview with Len Epp from @leanpub 👇

https://youtu.be/aXfjhf2cDo0

obfusk, 11 months ago to random

We recently updated the @fdroidorg Inclusion How-To with a new section explaining why we consider #ReproducibleBuilds to be best practice and are hoping developers will support our efforts to make as many (new) apps reproducible as we reasonably can (whilst hopefully making sure it's clear this is not a mandatory requirement):

https://f-droid.org/docs/Inclusion_How-To/#reproducible-builds

ProfCompMod, 1 year ago to jupyter

Excited to present our poster on "#Reproducible #workflows with #Jupyter" at the #JupyterCon 2023

Abstract at https://cfp.jupytercon.com/2023/talk/TBMDHB/, pdf version of poster at https://s.gwdg.de/RJxzhq

#JupyterCon2023 #reproducibility #reusability #python #datascience #mybinder #binder

@jupytercon @jupytercon @mpsd

cwebber, 1 year ago to random

Guix (and Mes) have achieved a FULL source bootstrap! This is INCREDIBLE STUFF! https://guix.gnu.org/blog/2023/the-full-source-bootstrap-building-from-source-all-the-way-down/

> We are delighted and somewhat relieved to announce that the third reduction of the Guix bootstrap binaries has now been merged in the main branch of Guix! If you run guix pull today, you get a package graph of more than 22,000 nodes rooted in a 357-byte program—something that had never been achieved, to our knowledge, since the birth of Unix.
>
> We refer to this as the Full-Source Bootstrap.

!!!!!!!!!!!!!!!!!!!!!!!!!!!